Ōtsuka Jinya: search on Z-Library

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1

Fine structure of iron ion in deoxymyoglobin and deoxyhemoglobin

Norihito Nakano, Jinya Otsuka, Akira Tasaki

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure

Year:

1971

Language:

english

File:

PDF, 636 KB

english, 1971

2

Evolution of Genetic Information Flow From the Viewpoint of Protein Sequence Similarity

Satoshi Fukuchi, Tetsuya Okayama, Jinya Otsuka

Journal:

Journal of Theoretical Biology

Year:

1994

File:

PDF, 964 KB

1994

3

The large-scale evolution by generating new genes from gene duplication; similarity and difference between monoploid and diploid organisms

Journal:

Journal of Theoretical Biology

Year:

2011

Language:

english

File:

PDF, 235 KB

english, 2011

4

Heitler-London Calculation on the Bonding of Oxygen to Hemoglobin. III. Singlet States in the Case of O - O Axis Inclined to Heme Plane

Seno, Yasunobu, Otsuka, Jinya, Matsuoka, Osamu, Fuchikami, Nobuko

Journal:

Journal of the Physical Society of Japan

Year:

1976

File:

PDF, 958 KB

1976

5

Calculation of the energy difference between the quaternary structures of deoxy- and oxyhemoglobin

Yasuhide Arata, Jinya Otsuka

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure

Year:

1975

Language:

english

File:

PDF, 920 KB

english, 1975

6

The electronic structure of ferrous heme with imidazole as the fifth ligand. I. SCF–LCAO–ASMO and CI calculation on the low-lying multiplets and optically allowed excited states

Seno, Yasunobu, Kameda, Noboru, Otsuka, Jinya

Journal:

The Journal of Chemical Physics

Year:

1980

Language:

english

File:

PDF, 1.10 MB

english, 1980

7

The Deep Phylogeny of Land Plants Inferred from a Full Analysis of Nucleotide Base Changes in Terms of Mutation and Selection

Yosuke Kawai, Jinya Otsuka

Journal:

Journal of Molecular Evolution

Year:

2004

Language:

english

File:

PDF, 241 KB

english, 2004

8

A theoretical approach to the large-scale evolution of multicellularity and cell differentiation

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 237 KB

english, 2008

9

Evolution of metabolic pathways by chance assembly of enzyme proteins generated from sense and antisense strands of pre-existing genes

Satoshi Fukuchi, Jinya Otsuka

Journal:

Journal of Theoretical Biology

Year:

1992

Language:

english

File:

PDF, 1.15 MB

english, 1992

10

A study on the quaternary structure change of hemoglobin in the ligation process

Yasuhide Arata, Yasunobu Seno, Jinya Otsuka

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1988

Language:

english

File:

PDF, 1.82 MB

english, 1988

11

Evolution of Transcriptional Regulation System through Promiscuous Coupling of Regulatory Proteins with Operons; Suggestion from Proteins Sequence Similarities inEscherichia coli

Jinya Otsuka, Hidemi Watanabe, Kentaro T. Mori

Journal:

Journal of Theoretical Biology

Year:

1996

Language:

english

File:

PDF, 3.83 MB

english, 1996

12

Discrimination between adaptive and neutral amino acid substitutions in vertebrate hemoglobins

Katsuhisa Horimoto, Hiromi Suzuki, Jinya Otsuka

Journal:

Journal of Molecular Evolution

Year:

1990

Language:

english

File:

PDF, 1.63 MB

english, 1990

13

Self-reproducing System can Behave as Maxwell's Demon: Theoretical Illustration under Prebiotic Conditions

Jinya Otsuka, Yuji Nozawa

Journal:

Journal of Theoretical Biology

Year:

1998

Language:

english

File:

PDF, 293 KB

english, 1998

14

A theoretical characterization of ecological systems by circular flow of materials

Journal:

Ecological Complexity

Year:

2004

Language:

english

File:

PDF, 222 KB

english, 2004

15

Structure model of core proteins in photosystem I inferred from the comparison with those in photosystem II and bacteria; an application of principal component analysis to detect the similar regions between distantly related families of protiens

Jinya Otsuka, Hidekazu Miyachi, Katsuhisa Horimoto

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1992

Language:

english

File:

PDF, 1.52 MB

english, 1992

16

The electronic structure of ferrous heme with imidazole as the fifth ligand. II. Explanation of MCD spectra from the near IR region to the Soret region

Seno, Yasunobu, Kameda, Noboru, Otsuka, Jinya

Journal:

The Journal of Chemical Physics

Year:

1980

Language:

english

File:

PDF, 1.08 MB

english, 1980

17

A theoretical method for evaluating the relative importance of positive selection and neutral drift from observed base changes

Jinya Otsuka, Satoshi Fukuchi, Norihiro Kikuchi

Journal:

Journal of Molecular Evolution

Year:

1997

Language:

english

File:

PDF, 3.19 MB

english, 1997

18

Phylogeny of Organisms Investigated by the Base-Pair Changes in the Stem Regions of Small and Large Ribosomal Subunit RNAs

Otsuka, Jinya, Terai, Goro, Nakano, Takao

Journal:

Journal of Molecular Evolution

Year:

1999

Language:

english

File:

PDF, 1.64 MB

english, 1999

19

A plausible sequence of the conformational changes of hemoglobin induced by oxygenation

Jinya Otsuka, Takashi Kunisawa

Journal:

Archives of Biochemistry and Biophysics

Year:

1977

Language:

english

File:

PDF, 776 KB

english, 1977

20

A simple procedure for assigning a sequence motif with an obscure pattern: application to the basic/helix-loop-helix motif

Horimoto, Katsuhisa, Yamamoto, Hisanori, Yanagi, Kazuo, Ohshima, Kunio, Otsuka, Jinya

Journal:

Protein Engineering Design and Selection

Year:

1994

Language:

english

File:

PDF, 820 KB

english, 1994

21

A comprehensive representation of extensive similarity linkage between large numbers of proteins

Watanabe, Hidemi, Otsuka, Jinya

Journal:

Year:

1995

Language:

english

File:

PDF, 6.71 MB

english, 1995

22

Similarity relations of DNA and RNA polymerases investigated by the principal component analysis of amino acid sequences

Jinya Otsuka, Norihiro Kikuchi, Shinji Kojima

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1999

Language:

english

File:

PDF, 3.03 MB

english, 1999

23

Paramagnetic anisotropy measurements on a single crystal of deoxyhemoglobin

Norihito Nakano, Jinya Otsuka, Akira Tasaki

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure

Year:

1972

Language:

english

File:

PDF, 887 KB

english, 1972

24

Magnetic susceptibility measurements on hemoproteins down to 4.2°K

Akira Tasaki, Ōtsuka Jinya, Masao Kotani

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure

Year:

1967

Language:

english

File:

PDF, 400 KB

english, 1967

25

The Influence of Selection on the Evolutionary Distance Estimated from the Base Changes Observed between Homologous Nucleotide Sequences

JINYA OTSUKA, YOSUKE KAWAI, NOBUYOSHI SUGAYA

Journal:

Journal of Theoretical Biology

Year:

2001

Language:

english

File:

PDF, 337 KB

english, 2001

26

Co-operative ligand binding in a protein composed of subunits

Takashi Kunisawa, Jinya Otsuka

Journal:

Journal of Theoretical Biology

Year:

1978

Language:

english

File:

PDF, 1.20 MB

english, 1978

27

Heitler-London Calculation on the Bonding of Oxygen to Hemoglobin. I. Singlet States in the Case of O-O Axis Parallel to Heme Plane

Seno, Yasunobu, Otsuka, Jinya, Matsuoka, Osamu, Fuchikami, Nobuko

Journal:

Journal of the Physical Society of Japan

Year:

1972

File:

PDF, 1.77 MB

1972

28

A Theoretical Study on the Nucleotide Changes Under a Definite Functional Constraint of Forming Stable Base-Pairs in the Stem Regions of Ribosomal RNAs; Its Application to the Phylogeny of Eukaryotes

Jinya Otsuka, Takao Nakano, Goro Terai

Journal:

Journal of Theoretical Biology

Year:

1997

Language:

english

File:

PDF, 390 KB

english, 1997

29

Advanced formulation of base pair changes in the stem regions of ribosomal RNAs; its application to mitochondrial rRNAs for resolving the phylogeny of animals

Jinya Otsuka, Nobuyoshi Sugaya

Journal:

Journal of Theoretical Biology

Year:

2003

Language:

english

File:

PDF, 242 KB

english, 2003

30

Characteristic base sequence patterns of promoter and terminator sites in φX174 and fd phage DNAs

Jinya Otsuka, Takashi Kunisawa

Journal:

Journal of Theoretical Biology

Year:

1982

Language:

english

File:

PDF, 1.37 MB

english, 1982

31

Heitler-London Calculation on the Bonding of Oxygen to Hemoglobin. II. Explanation of the Diamagnetism of Oxyhemoglobin for the Parallel Arrangement of O 2 to the Heme

Otsuka, Jinya, Matsuoka, Osamu, Fuchikami, Nobuko, Seno, Yasunobu

Journal:

Journal of the Physical Society of Japan

Year:

1973

File:

PDF, 711 KB

1973

32

10.1295/kobunshi.40.758

Journal:

Year:

1991

File:

PDF, 251 KB

1991

33

Accumulation pattern of amino acid substitutions in protein evolution

Takashi Kunisawa, Katsuhisa Horimoto, Jinya Otsuka

Journal:

Journal of Molecular Evolution

Year:

1987

Language:

english

File:

PDF, 681 KB

english, 1987

34

The Lineage-Specific Base-Pair Contents in the Stem Regions of Ribosomal RNAs and Their Influence on the Estimation of Evolutionary Distances

Nobuyoshi Sugaya, Jinya Otsuka

Journal:

Journal of Molecular Evolution

Year:

2002

Language:

english

File:

PDF, 189 KB

english, 2002

35

Divergence pattern and selective mode in protein evolution: The example of vertebrate myoglobins and hemoglobin chains

Jinya Otsuka, Kenji Miyazaki, Katsuhisa Horimoto

Journal:

Journal of Molecular Evolution

Year:

1993

Language:

english

File:

PDF, 2.06 MB

english, 1993

36

One interpretation of the thermal equilibrium between high-spin and low-spin states in ferrihemoproteins

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure

Year:

1970

Language:

english

File:

PDF, 161 KB

english, 1970

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